PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002513
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 260aa    MW: 29586.5 Da    PI: 6.9579
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002513genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.34.4e-3745144199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCa+Ck++rrkC +dC+lapyfp++ +++f n+hklFG+++++k++++l  + ++++am+s+++++++ra+dPv G+++++l+lq+q++ ++a+l+ll
  Lus10002513  45 ACASCKYQRRKCDPDCILAPYFPHDCQRQFLNAHKLFGVRKITKIIENLvTQAHKDEAMRSIIFQSDVRANDPVGGCYRIVLELQRQINYAQADLDLL 142
                  7***********************************************9455559***************************************9987 PP

       DUF260  98 ke 99 
                   +
  Lus10002513 143 LH 144
                  65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.8144146IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-3545141IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSNNTSPISI TTTTSSNTNT NTNTNSSNKN NNNISRTANG GTTPACASCK YQRRKCDPDC  60
ILAPYFPHDC QRQFLNAHKL FGVRKITKII ENLVTQAHKD EAMRSIIFQS DVRANDPVGG  120
CYRIVLELQR QINYAQADLD LLLHHLAIYQ QQQQQKHHQN HHQQQDQTTI DTNIDSAMMA  180
AVGCMDVYTD PMLLQFHYSP QQQPQQQPDH EEQQQQHHHH HHHHHHQNQQ QHHQLHGYAV  240
EDTLQDSDSV NSWGMAAGG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068972.13e-63PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW18e-49LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A067L9L13e-63A0A067L9L1_JATCU; Uncharacterized protein
STRINGPOPTR_0003s04520.15e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-40LOB domain-containing protein 22